public class AnnotateVCFCommand extends JannovarAnnotationCommand
| Constructor and Description |
|---|
AnnotateVCFCommand(String[] argv,
net.sourceforge.argparse4j.inf.Namespace args) |
| Modifier and Type | Method and Description |
|---|---|
void |
run()
This function inputs a VCF file, and prints the annotated version thereof to a file (name of the original file
with the suffix .de.charite.compbio.jannovar).
|
public AnnotateVCFCommand(String[] argv, net.sourceforge.argparse4j.inf.Namespace args) throws CommandLineParsingException
CommandLineParsingExceptionpublic void run()
throws JannovarException
run in class JannovarCommandJannovarException - on problems with the annotationCopyright © 2016. All rights reserved.