public class JannovarAnnotatePosOptions extends JannovarAnnotationOptions
| Constructor and Description |
|---|
JannovarAnnotatePosOptions() |
| Modifier and Type | Method and Description |
|---|---|
List<String> |
getGenomicChanges() |
void |
setFromArgs(net.sourceforge.argparse4j.inf.Namespace args)
Get values from
Namespace object |
void |
setGenomicChanges(List<String> genomicChanges) |
static void |
setupParser(net.sourceforge.argparse4j.inf.Subparsers subParsers)
Setup
ArgumentParser |
String |
toString() |
getDatabaseFilePath, isNt3PrimeShifting, isShowAll, isUseThreeLetterAminoAcidCode, setDatabaseFilePath, setNt3PrimeShifting, setShowAll, setupParser, setUseThreeLetterAminoAcidCodegetFtpProxy, getHttpProxy, getHttpsProxy, getVerbosity, isReportProgress, setFtpProxy, setHttpProxy, setHttpsProxy, setReportProgress, setVerbositypublic static void setupParser(net.sourceforge.argparse4j.inf.Subparsers subParsers)
ArgumentParsersubParsers - Subparsers to setuppublic void setFromArgs(net.sourceforge.argparse4j.inf.Namespace args)
throws CommandLineParsingException
JannovarBaseOptionsNamespace objectsetFromArgs in class JannovarAnnotationOptionsargs - Namespace to get the option values fromCommandLineParsingException - on problems parsing a given URLpublic String toString()
toString in class JannovarAnnotationOptionsCopyright © 2016. All rights reserved.